Poxvirus Orthologous Clusters (POCs)

Academic Article

Abstract

  • Poxvirus Orthologous Clusters (POCs) is a JAVA client-server application which accesses an updated database containing all complete poxvirus genomes; it automatically groups orthologous genes into families based on BLASTP scores for assessment by a human database curator. POCs has a user-friendly interface permitting complex SQL queries to retrieve interesting groups of DNA and protein sequences as well as gene families for subsequent interrogation by a variety of integrated tools: BLASTP, BLASTX, TBLASTN, Jalview (multiple alignment), Dotlet (Dotplot), Laj (local alignment), and NAP (nucleotide to amino acid alignment). © Oxford University Press 2002.
  • Authors

    Published In

  • Bioinformatics  Journal
  • Digital Object Identifier (doi)

    Author List

  • Ehlers A; Osborne J; Slack S; Roper RL; Upton C
  • Start Page

  • 1544
  • End Page

  • 1545
  • Volume

  • 18
  • Issue

  • 11