Photoactivatabu Porphyrin Oligonucleotide Derivatives For Sequence Specific Ceemical Modification And Cleavage Of Dna

Academic Article

Abstract

  • Oligonucleotide derivatives bearing porphyrin groups cause site-specific modification of DNA after irradiation with visible light. Oligonucleotide derivative bearing a porphyrin group: dimethyl ester of 2,4-di[u-(2-hydroxyethyl)oxyethyll-deuteroporphyrin IX (R) at the 5*-theminus was synthesized. Reaction of this derivative with a single-stranded DNA fragment containing a nucleotide sequence complementary to this oligonucleotide was investigated. Irradiation of the complex formed by this oligonucleotide and the DNA with visible light (350-450 nm, 2.8 W/m2) resulted in sequence specific chemical modification of the target at two consecutive guanosines near the binding site. The modified DNA could be cleaved at the modified residues by the hot piperi- 641 Copyright 0 1991 by Marcel Dekker, Inc. 642 VLASSOV ET AL. FIGURE 1 Modification of the SSDNA fragment by a porphyrin derivatives of oligonucleotide pd(TGACCCTCTTCCCATT ). Lane 1 -incubation in the dark; Lane 2 -incubation under irradiation for 1 hour in the presence of oxygen; Lane 3 -incubation under irradiation for 1 hour in the absence of oxygen. Modification conditions: 10% 32P-labelled ssDNA fragment : 1 O-5M oligonucleotide derivativative; Buffer: 0.05 M Tris-HC1,pH 7,5; 0.1 M NaC1. dine treatment. Quantum yield of the reaction (calculated as a ratio of the DNA modification extent to the number of photons absorbed by one porphyrin group) was at the reagent concentration of M. S-shaped reaction kinetic curve suggested a complex, at least two-step, mechanism of the process. The existense of the secondary conversions was confirmed by the increase of the reaction yield in the course of the incubation of the reaction mixture in the dark after short exposure to the light. © 1990, Taylor & Francis Group, LLC. All rights reserved.
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    Author List

  • Vlassov VV; Deeva EA; Ivanova EM; Knorre DG; Maltseva TV; Frolova EI
  • Start Page

  • 641
  • End Page

  • 643
  • Volume

  • 10
  • Issue

  • 1-3