Positions

Selected Publications

Academic Article

Year Title Altmetric
2018 CUILESS2016: A clinical corpus applying compositional normalization of text mentionsJournal of Biomedical Semantics.  9. 2018
2018 Phenotype Detection Registry System (PheDRS) - Implementation of a Generalizable Single Institution Clinical Registry ArchitectureAMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium.  2018:847-856. 2018
2016 Efficient identification of nationally mandated reportable cancer cases using natural language processing and machine learningJournal of the American Medical Informatics Association.  23:1077-1084. 2016
2015 Comparative genome analysis of Mycoplasma pneumoniaeBMC Genomics.  16. 2015
2014 Reduction of hydrogen peroxide accumulation and toxicity by a catalase from Mycoplasma iowaePLoS ONE.  9. 2014
2014 Draft genome sequence of Hymenobacter sp. strain IS2118, isolated from a freshwater lake in Schirmacher Oasis, Antarctica, reveals diverse genes for adaptation to cold ecosystemsGenome Announcements.  2. 2014
2013 Type 1 and type 2 strains of Mycoplasma pneumoniae form different biofilmsMicrobiology.  159:737-747. 2013
2009 Annotating the human genome with Disease OntologyBMC Genomics.  10. 2009
2007 Genomic differences of Vaccinia virus clones from Dryvax smallpox vaccine: The Dryvax-like ACAM2000 and the mouse neurovirulent Clone-3Vaccine.  25:8807-8832. 2007
2007 OBO-Edit - An ontology editor for biologistsComputer applications in the biosciences : CABIOS.  23:2198-2200. 2007
2007 Other riffs on cooperation are already showing how well a wiki could work [1]Nature.  446:856. 2007
2007 Interpreting microarray results with gene ontology and MeSHMethods in Molecular Biology.  377:223-241. 2007
2007 GeneChip resequencing of the smallpox virus genome can identify novel strains: A biodefense applicationJournal of Clinical Microbiology.  45:358-363. 2007
2007 Interpreting microarray results with gene ontology and MeSH.Methods in Molecular Biology.  377:223-242. 2007
2007 Mining biomedical data using MetaMap Transfer (MMtx) and the Unified Medical Language System (UMLS).Methods in Molecular Biology.  408:153-169. 2007
2006 Genomic sequence and analysis of a vaccinia virus isolate from a patient with a smallpox vaccine-related complicationVirology Journal.  3. 2006
2006 Genome sequence diversity and clues to the evolution of variola (smallpox) virusScience.  313:807-812. 2006
2002 Poxvirus Orthologous Clusters (POCs)Computer applications in the biosciences : CABIOS.  18:1544-1545. 2002
1992 Assessing the five-factor model of personality description.Journal of Personality.  60:253-293. 1992

Education And Training

  • Doctor of Philosophy in Computer and Information Sciences, University of Alabama at Birmingham 2016
  • Master's Level Degree in Genetics, University of Alberta 1998
  • Bachelor's Level Degree in Computer Science, University of Alberta 1994
  • Full Name

  • John Osborne