Positions

Selected Publications

Academic Article

Year Title Altmetric
2018 GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts.  Computer applications in the biosciences : CABIOS.  34:4287-4289. 2018
2018 Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenström macroglobulinemia.  Nature Communications.  9. 2018
2018 Erratum: Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer (Cell (2017) 171(3) (540–556.e25) (S0092867417310565) (10.1016/j.cell.2017.09.007)).  Cell.  174:1033. 2018
2018 The Immune Landscape of Cancer.  Immunity.  48:812-830.e14. 2018
2018 A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers.  Cancer Cell.  33:690-705.e9. 2018
2018 Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas.  Cancer Cell.  33:721-735.e8. 2018
2018 Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas.  Cell Reports.  23:194-212.e6. 2018
2017 Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer.  Cell.  171:540-556.e25. 2017
2017 Clinicopathologic and molecular markers in cervical carcinoma: a prospective cohort study.  American Journal of Obstetrics and Gynecology.  217:432.e1-432.e17. 2017
2017 Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma.  Cell.  169:1327-1341.e23. 2017
2017 Integrated genomic and molecular characterization of cervical cancer.  Nature.  543:378-384. 2017
2017 Erratum: Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles (Cell Reports (2017) 18(11) (2780–2794) (S2211124717302140) (10.1016/j.celrep.2017.02.033)).  Cell Reports.  19:2878-2880. 2017
2017 Integrated genomic characterization of oesophageal carcinoma.  Nature.  541:169-174. 2017
2017 Pathway-structured predictive model for cancer survival prediction: A two-stage approach.  Genetics.  205:89-100. 2017
2016 Notch signaling activation is associated with patient mortality and increased FGF1-mediated invasion in squamous cell carcinoma of the oral cavity.  Cell Growth and Differentiation.  14:883-891. 2016
2016 Racial disparities in individual breast cancer outcomes by hormone-receptor subtype, area-level socio-economic status and healthcare resources.  Breast Cancer Research and Treatment.  157:575-586. 2016
2016 Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn's Disease.  Cellular and Molecular Gastroenterology and Hepatology.  2:563-566.e5. 2016
2015 Comprehensive genomic characterization of head and neck squamous cell carcinomas.  Nature.  517:576-582. 2015
2015 Genomic aberrations in cervical adenocarcinomas in Hong Kong Chinese women.  International Journal of Cancer.  137:776-783. 2015
2015 The tumor virus landscape of AIDS-related lymphomas.  Blood.  125:e14-e22. 2015
2014 Characterization of HPV and host genome interactions in primary head and neck cancers.  Proceedings of the National Academy of Sciences.  111:15544-15549. 2014
2014 Integrated Genomic Characterization of Papillary Thyroid Carcinoma.  Cell.  159:676-690. 2014
2014 Comprehensive molecular characterization of gastric adenocarcinoma.  Nature.  513:202-209. 2014
2014 Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin.  Cell.  158:929-944. 2014
2014 Landscape of genomic alterations in cervical carcinomas.  Nature.  506:371-375. 2014
2013 Somatic mutation of CDKN1B in small intestine neuroendocrine tumors.  Nature Genetics.  45:1483-1486. 2013
2013 The cancer genome atlas pan-cancer analysis project.  Nature Genetics.  45:1113-1120. 2013
2013 Abstract 4604: Landscape of human and viral genomic alterations in cervical carcinomas..  Cancer Research.  73:4604-4604. 2013
2013 Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome.  New England Journal of Medicine.  369:517-528. 2013
2012 Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing.  Proceedings of the National Academy of Sciences.  109:3879-3884. 2012
2012 Genomic analysis identifies association of Fusobacterium with colorectal carcinoma.  PCR methods and applications.  22:292-298. 2012
2012 Pathogen discovery in AIDS-related lymphoma by high-throughput sequencing..  Infectious Agents and Cancer.  7:P45-P45. 2012
2011 PathSeq: Software to identify or discover microbes by deep sequencing of human tissue.  Nature Biotechnology.  29:393-396. 2011
2011 Abstract 949: PathSeq: A comprehensive computational tool for pathogen discovery by deep sequencing of human cancer tissues.  Cancer Research.  71:949-949. 2011
2008 Interplay of reverse transcriptase inhibitor therapy and gag p6 diversity in HIV type 1 subtype G and CRF02_AG.  AIDS Research and Human Retroviruses.  24:1167-1174. 2008
2007 Characterization of HIV type 1 reverse transcriptase mutations in infants infected by mothers who received peripartum nevirapine prophylaxis in Jos, Nigeria.  AIDS Research and Human Retroviruses.  23:1587-1591. 2007
2007 The complexity of circulating HIV type 1 strains in Oyo State, Nigeria.  AIDS Research and Human Retroviruses.  23:1020-1025. 2007
2006 HIV-1 subtype and reverse transcriptase genotype: Role for geographical location and founder effects [7].  PLoS Medicine.  3:2462-2463. 2006
2006 Subtype-specific patterns in HIV type 1 reverse transcriptase and protease in Oyo State, Nigeria: Implications for drug resistance and host response.  AIDS Research and Human Retroviruses.  22:770-779. 2006
2004 Correspondence [2] (multiple letters).  Journal of Pediatric Surgery.  39:1446-1447. 2004
2002 Decline in the frequency of Burkitt's lymphoma relative to other childhood malignancies in Ibadan, Nigeria.  Annals of Tropical Paediatrics.  22:159-163. 2002

Book

Year Title Altmetric
2006 AIDS in Nigeria A Nation on the Threshold 2006

Chapter

Year Title Altmetric
2006 The Molecular Epidemiology of HIV..  67-92. 2006

Full Name

  • Akinyemi Ojesina