Selected Publications

Academic Article

Year Title Altmetric
2019 Gain of function in somatic TP53 mutations is associated with immune-rich breast tumors and changes in tumor-associated macrophagesMolecular Genetics and Genomic Medicine.  7. 2019
2019 Erratum: The Immune Landscape of Cancer (Immunity (2018) 48(4) (812–830.e14), (S1074761318301213), (10.1016/j.immuni.2018.03.023))Immunity.  51:411-412. 2019
2018 GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hostsBioinformatics.  34:4287-4289. 2018
2018 Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenström macroglobulinemiaNature Communications.  9. 2018
2018 Erratum: Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer (Cell (2017) 171(3) (540–556.e25) (S0092867417310565) (10.1016/j.cell.2017.09.007))Cell.  174:1033. 2018
2018 The Immune Landscape of CancerImmunity.  48:812-830.e14. 2018
2018 A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast CancersCancer Cell.  33:690-705.e9. 2018
2018 Comparative Molecular Analysis of Gastrointestinal AdenocarcinomasCancer Cell.  33:721-735.e8. 2018
2018 Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous CarcinomasCell Reports.  23:194-212.e6. 2018
2017 Comprehensive Molecular Characterization of Muscle-Invasive Bladder CancerCell.  171:540-556.e25. 2017
2017 Clinicopathologic and molecular markers in cervical carcinoma: a prospective cohort studyAmerican Journal of Obstetrics and Gynecology.  217:432.e1-432.e17. 2017
2017 Erratum: Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles (Cell Reports (2017) 18(11) (2780–2794) (S2211124717302140) (10.1016/j.celrep.2017.02.033))Cell Reports.  19:2878-2880. 2017
2017 Comprehensive and Integrative Genomic Characterization of Hepatocellular CarcinomaCell.  169:1327-1341.e23. 2017
2017 Integrated genomic and molecular characterization of cervical cancerNature.  543:378-384. 2017
2017 Integrated genomic characterization of oesophageal carcinomaNature.  541:169-174. 2017
2017 Pathway-structured predictive model for cancer survival prediction: A two-stage approach 2017
2016 Notch signaling activation is associated with patient mortality and increased FGF1-mediated invasion in squamous cell carcinoma of the oral cavity 2016
2016 Racial disparities in individual breast cancer outcomes by hormone-receptor subtype, area-level socio-economic status and healthcare resourcesBreast Cancer Research and Treatment.  157:575-586. 2016
2016 Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach 2016
2016 Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn's DiseaseCellular and Molecular Gastroenterology and Hepatology.  2:563-566.e5. 2016
2015 Comprehensive genomic characterization of head and neck squamous cell carcinomasNature.  517:576-582. 2015
2015 Genomic aberrations in cervical adenocarcinomas in Hong Kong Chinese womenInternational Journal of Cancer.  137:776-783. 2015
2015 The tumor virus landscape of AIDS-related lymphomasBlood.  125:e14-e22. 2015
2014 Characterization of HPV and host genome interactions in primary head and neck cancers 2014
2014 Integrated Genomic Characterization of Papillary Thyroid CarcinomaCell.  159:676-690. 2014
2014 Comprehensive molecular characterization of gastric adenocarcinomaNature.  513:202-209. 2014
2014 Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of originCell.  158:929-944. 2014
2014 Landscape of genomic alterations in cervical carcinomasNature.  506:371-375. 2014
2013 Somatic mutation of CDKN1B in small intestine neuroendocrine tumorsNature Genetics.  45:1483-1486. 2013
2013 The cancer genome atlas pan-cancer analysis projectNature Genetics.  45:1113-1120. 2013
2013 Abstract 4604: Landscape of human and viral genomic alterations in cervical carcinomas.Molecular and Cellular Biology2013
2013 Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndromeNew England Journal of Medicine.  369:517-528. 2013
2012 Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing 2012
2012 Genomic analysis identifies association of Fusobacterium with colorectal carcinoma 2012
2012 Pathogen discovery in AIDS-related lymphoma by high-throughput sequencing.Infectious Agents and Cancer.  7:P45-P45. 2012
2011 PathSeq: Software to identify or discover microbes by deep sequencing of human tissueNature Biotechnology.  29:393-396. 2011
2011 Abstract 949: PathSeq: A comprehensive computational tool for pathogen discovery by deep sequencing of human cancer tissuesEpidemiology2011
2008 Interplay of reverse transcriptase inhibitor therapy and gag p6 diversity in HIV type 1 subtype G and CRF02_AGAIDS Research and Human Retroviruses.  24:1167-1174. 2008
2007 Characterization of HIV type 1 reverse transcriptase mutations in infants infected by mothers who received peripartum nevirapine prophylaxis in Jos, NigeriaAIDS Research and Human Retroviruses.  23:1587-1591. 2007
2007 The complexity of circulating HIV type 1 strains in Oyo State, NigeriaAIDS Research and Human Retroviruses.  23:1020-1025. 2007
2006 HIV-1 subtype and reverse transcriptase genotype: Role for geographical location and founder effects [7]PLoS Medicine.  3:2462-2463. 2006
2006 Subtype-specific patterns in HIV type 1 reverse transcriptase and protease in Oyo State, Nigeria: Implications for drug resistance and host responseAIDS Research and Human Retroviruses.  22:770-779. 2006
2005 Launching into the deep: the musings of a budding physician-scientistArchives of Ibadan Medicine.  6. 2005
2004 Correspondence [2] (multiple letters)Journal of Pediatric Surgery.  39:1446-1447. 2004
2002 Decline in the frequency of Burkitt's lymphoma relative to other childhood malignancies in Ibadan, NigeriaAnnals of Tropical Paediatrics.  22:159-163. 2002
2000 Improving the Medical CurriculumDOKITA.  27:23-28. 2000
1999 Congenital Heart DiseaseDOKITA.  26:49-54. 1999
1998 Paediatric Oncology I: Basic ConceptsDOKITA.  25:47-50. 1998
1997 Spero MelioraDOKITA.  24:viii-viii. 1997
1997 The Red EyeDOKITA.  24:1-8. 1997
1996 Serological Diagnosis of Viral Hepatitis A, B, C, D, E.DOKITA.  23:22-26. 1996
Paediatric Oncology II: Childhood Neoplasia in IbadanDOKITA.  25:50-55.


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2006 AIDS in Nigeria A Nation on the Threshold 2006


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2006 The Molecular Epidemiology of HIV..  67-92. 2006

Full Name

  • Akinyemi Ojesina