Selected Publications

Academic Article

Year Title Altmetric
2019 New quantitative approach reveals heterogeneity in mitochondrial structure–function relations in tumor-initiating cellsJournal of Cell Science.  132. 2019
2019 Grammar of protein domain architectures 2019
2016 Crosstalk between the mitochondrial fission protein, Drp1, and the cell cycle is identified across various cancer types and can impact survival of epithelial ovarian cancer patientsOncotarget.  7:60021-60037. 2016
2015 Computational methods and resources for the interpretation of genomic variants in cancerBMC Genomics.  16. 2015
2015 A new mitochondrial pool of cyclin E, regulated by Drp1, is linked to cell-density-dependent cell proliferationJournal of Cell Science.  128:4171-4182. 2015
2014 ContrastRank: A new method for ranking putative cancer driver genes and classification of tumor samplesBioinformatics.  30. 2014
2014 Draft genome sequence of Pseudomonas sp. strain Ant30-3, a psychrotolerant bacterium with biodegradative attribute isolated from AntarcticaGenome Announcements.  2. 2014
2013 TIGRFAMs and genome properties in 2013Nucleic Acids Research.  41. 2013
2011 ProPhylo: Partial phylogenetic profiling to guide protein family construction and assignment of biological processBMC Bioinformatics.  12. 2011
2011 Biological systems discovery in silico: Radical S-adenosylmethionine protein families and their target peptides for posttranslational modificationJournal of Bacteriology.  193:2745-2755. 2011
2011 The ecoresponsive genome of Daphnia pulexScience.  331:555-561. 2011
2010 Expansion of ribosomally produced natural products: A nitrile hydratase- and Nif11-related precursor familyBMC Biology.  8. 2010
2009 Domain mobility in proteins: Functional and evolutionary implicationsBriefings in Bioinformatics.  10:205-216. 2009
2008 Primordial spliceosomal introns were probably U2-typeTrends in Genetics.  24:525-528. 2008
2008 U12 intron positions are more strongly conserved between animals and plants than U2 intron positionsBiology Direct.  3. 2008
2008 Evolution of protein domain promiscuity in eukaryotes 2008
2008 Evolutionary dynamics of introns in plastid-derived genes in plants: Saturation nearly reached but slow intron gain continuesMolecular Biology and Evolution.  25:111-119. 2008
2006 Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysisBMC Cancer.  6. 2006
2005 APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysisCell Cycle.  4:1281-1285. 2005
2005 Evolution of eukaryotic cysteine sulfinic acid reductase, sulfiredoxin (Srx), from bacterial chromosome partitioning protein ParBCell Cycle.  4:947-952. 2005

Education And Training

  • Doctor of Philosophy Level Degree in Bioinformatics, Jawaharlal Nehru University 2003
  • Full Name

  • Malay Basu