Positions

Selected Publications

Academic Article

Year Title Altmetric
2019 New quantitative approach reveals heterogeneity in mitochondrial structure–function relations in tumor-initiating cells.  Journal of Cell Science.  132. 2019
2019 Grammar of protein domain architectures.  Proceedings of the National Academy of Sciences.  116:3636-3645. 2019
2016 Crosstalk between the mitochondrial fission protein, Drp1, and the cell cycle is identified across various cancer types and can impact survival of epithelial ovarian cancer patients.  Oncotarget.  7:60021-60037. 2016
2015 Computational methods and resources for the interpretation of genomic variants in cancer.  BMC Genomics.  16. 2015
2015 A new mitochondrial pool of cyclin E, regulated by Drp1, is linked to cell-density-dependent cell proliferation.  Journal of Cell Science.  128:4171-4182. 2015
2014 ContrastRank: A new method for ranking putative cancer driver genes and classification of tumor samples.  Computer applications in the biosciences : CABIOS.  30. 2014
2014 Draft genome sequence of Pseudomonas sp. strain Ant30-3, a psychrotolerant bacterium with biodegradative attribute isolated from Antarctica.  Genome Announcements.  2. 2014
2013 TIGRFAMs and genome properties in 2013.  Nucleic Acids Research.  41. 2013
2011 ProPhylo: Partial phylogenetic profiling to guide protein family construction and assignment of biological process.  BMC Bioinformatics.  12. 2011
2011 Biological systems discovery in silico: Radical S-adenosylmethionine protein families and their target peptides for posttranslational modification.  Journal of Bacteriology.  193:2745-2755. 2011
2011 The ecoresponsive genome of Daphnia pulex.  Science.  331:555-561. 2011
2010 Expansion of ribosomally produced natural products: A nitrile hydratase- and Nif11-related precursor family.  BMC Biology.  8. 2010
2009 Domain mobility in proteins: Functional and evolutionary implications.  Briefings in Bioinformatics.  10:205-216. 2009
2008 Primordial spliceosomal introns were probably U2-type.  Trends in Genetics.  24:525-528. 2008
2008 U12 intron positions are more strongly conserved between animals and plants than U2 intron positions.  Biology Direct.  3. 2008
2008 Evolution of protein domain promiscuity in eukaryotes.  PCR methods and applications.  18:449-461. 2008
2008 Evolutionary dynamics of introns in plastid-derived genes in plants: Saturation nearly reached but slow intron gain continues.  Molecular Biology and Evolution.  25:111-119. 2008
2006 Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis.  BMC Cancer.  6. 2006
2005 APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis.  Cell Cycle.  4:1281-1285. 2005
2005 Evolution of eukaryotic cysteine sulfinic acid reductase, sulfiredoxin (Srx), from bacterial chromosome partitioning protein ParB.  Cell Cycle.  4:947-952. 2005

Education And Training

  • Doctor of Philosophy Level Degree in Bioinformatics, Jawaharlal Nehru University 2003

    • Full Name

  • Malay Basu