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CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries.
BEERE: a web server for biomedical entity expansion, ranking and explorations.
Erratum: Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein (Nucleic acids research (2018) 46 20 (11030-11047)).
A dual-functional priming-capping loop of rhabdoviral RNA polymerases directs terminal de novo initiation and capping intermediate formation.
Splice-Break: Exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders.
Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein.
PAGER 2.0: An update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.
Virus taxonomy: The database of the International Committee on Taxonomy of Viruses (ICTV).
Activities of gyrase and topoisomerase IV on positively supercoiled DNA.
Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate.
Molecular mechanisms by which oxidative DNA damage promotes telomerase activity.
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
Entropic stabilization of folded RNA in crowded solutions measured by SAXS.
CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.
Do nucleic acids moonlight as molecular chaperones?.
Signature motifs of GDP polyribonucleotidyltransferase, a non-segmented negative strand RNA viral mRNA capping enzyme, domain in the L protein are required for covalent enzyme-pRNA intermediate formation.
LKB1 preserves genome integrity by stimulating BRCA1 expression.
Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme.
Blocking of targeted microRNAs from next-generation sequencing libraries.
Massively parallel determination and modeling of endonuclease substrate specificity.
Retinoid acid-related orphan receptor γ, RORγ, participates in diurnal transcriptional regulation of lipid metabolic genes.
Characterization of the imprinting signature of mouse embryo fibroblasts by RNA deep sequencing.
Reprogramming homing endonuclease specificity through computational design and directed evolution.
Progressive engineering of a homing endonuclease genome editing reagent for the murine X-linked immunodeficiency locus.
Prospero-related homeobox 1 (Prox1) functions as a novel modulator of retinoic acid-related orphan receptors α- and γ-mediated transactivation.
Nucleocapsid protein structures from orthobunyaviruses reveal insight into ribonucleoprotein architecture and RNA polymerization.
Topoisomerase IV-quinolone interactions are mediated through a water-metal ion bridge: Mechanistic basis of quinolone resistance.
Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.
MicroRNAs contribute to the maintenance of cell-type-specific physiological characteristics: MiR-192 targets Na+/K+-ATPase β1.
Redox-active quinones induces genome-wide DNA methylation changes by an iron-mediated and Tet-dependent mechanism.
TIGRFAMs and genome properties in 2013.
Phosphorylation of PNKP by ATM prevents its proteasomal degradation and enhances resistance to oxidative stress.
Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution.
RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo.
Hyperexpansion of GAA repeats affects post-initiation steps of FXN transcription in Friedreich's ataxia.
In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites.
Retinoic acid-related orphan receptor γ directly regulates neuronal PAS domain protein 2 transcription in vivo.
Mutant CAG repeats of Huntingtin transcript fold into hairpins, form nuclear foci and are targets for RNA interference.
Coordinated allele-specific histone acetylation at the differentially methylated regions of imprinted genes.
MicroRNA-target pairs in human renal epithelial cells treated with transforming growth factor β1: A novel role of miR-382.
Beyond Affymetrix arrays: Expanding the set of known hybridization isotherms and observing pre-wash signal intensities.
Long intronic GAA•TTC repeats induce epigenetic changes and reporter gene silencing in a molecular model of Friedreich ataxia.
Functional analysis of the zinc finger and activation domains of Glis3 and mutant Glis3(NDH1).
Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays.
Ubiquitin-interaction motifs of RAP80 are critical in its regulation of estrogen receptor α.
Electrospray ionisation-cleavable tandem nucleic acid mass tag-peptide nucleic acid conjugates: Synthesis and applications to quantitative genomic analysis using electrospray ionisation-MS/MS.
Selection and cloning of poly(rC)-binding protein 2 and Raf kinase inhibitor protein RNA activators of 2′,5′-oligoadenylate synthetase from prostate cancer cells.
Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted.
AliWABA: Alignment on the web through an A-Bruijn approach.
Krüppel-like zinc finger protein Gli-similar 2 (Glis2) represses transcription through interaction with C-terminal binding protein 1 (CtBP1).
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.
The ELAV RNA-stability factor HuR binds the 5′-untranslated region of the human IGF-IR transcript and differentially represses cap-dependent and IRES-mediated translation.
Expression and regulation of the Msx1 natural antisense transcript during development.
Advances in mechanisms of genetic instability related to hereditary neurological diseases.
Facile FMR1 mRNA structure regulation by interruptions in CGG repeats.
Poxvirus Bioinformatics Resource Center: A comprehensive Poxviridae informational and analytical resource.
TIP27: A novel repressor of the nuclear orphan receptor TAK1/TR4.
A Fugu-human genome synteny viewer: Web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes.
Rapid tagging of endogenous mouse genes by recombineering and ES cell complementation of tetraploid blastocysts..
GLIS3, a novel member of the GLIS subfamily of Krüppel-like zinc finger proteins with repressor and activation functions.
Structures of trinucleotide repeats in human transcripts and their functional implications.
Stability of the Sp3-DNA complex is promoter-specific: Sp3 efficiently competes with Sp1 for binding to promoters containing multiple Sp-sites.
Mitochondria-mediated nuclear mutator phenotype in Saccharomyces cerevisiae.
Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence.
Self-association and conformational properties of RAG1: Implications for formation of the V(D)J recombinase.
Uracil-DNA glycosylase-deficient yeast exhibit a mitochondrial mutator phenotype.
Overexpression of human RAD51 and RAD52 reduces double-strand break-induced homologous recombination in mammalian cells.
Mi2, an auto-antigen for dermatomyositis, is an ATP-dependent nucleosome remodeling factor.
A reliable assessment of 8-oxo-2-deoxyguanosine levels in nuclear and mitochondrial DNA using the sodium iodide method to isolate DNA.
Ku80 is required for addition of N nucleotides to V(D)J recombination junctions by terminal deoxynucleotidyl transferase.
Inactivation of Saccharomyces cerevisiae OGG1 DNA repair gene leads to an increased frequency of mitochondrial mutants.
Polymorphism in the 3′-untranslated region of TNFα mRNA impairs binding of the post-transcriptional regulatory protein HuR to TNFα mRNA.
Quantification of splice variants using real-time PCR..
Human β-globin gene promoter element regulates human β-globin gene developmental specificity.
A method for quantification of absolute amounts of nucleic acids by (RT)-PCR and a new mathematical model for data analysis..
RNA-binding analyses of HuC and HuD with the VEGF and c-myc 3'-untranslated regions using a novel ELISA-based assay..
Binding of the glucose-dependent Mig1p repressor to the GAL1 and GAL4 promoters in vivo: Regulation by glucose and chromatin structure.
Stochastic, stage-specific mechanisms account for the variegation of a human globin transgene.
Characterization of the RNA binding proteins forming complexes with a novel putative regulatory region in the 3'-UTR of TNF-α mRNA.
Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein.
PCR - SSCP - HDX analysis of pooled DNA for more rapid detection of germline mutations in large genes. The BRCA1 example.
A sindbis virus mRNA polynucleotide vector achieves prolonged and high level heterologous gene expression in vivo.
Photoaffinity approaches to determining the sequence selectivities of DNA-small molecule interactions: Actinomycin D and ethidium.
Rapid confirmation of single copy lambda prophage integration by PCR.
Construction of a genomic DNA 'feature map' by sequencing from nested deletions: Application to the HLA class I region.
Mouse silver. Mutation is caused by a single base insertion in the putative cytoplasmic domain of Pmel 17.
Daunomycin modifies the sequence-selective recognition of DNA by actinomycin.
Rapid confirmation of single copy lambda prophage integration by PCR.
Mutagenesis of the cyclic AMP receptor protein of Escherichia coli: Targeting positions 83, 127 and 128 the cyclic nucleotide binding pocket.
Cloning and functional characterization of LCR-F1: A bZIP transcription factor that activates erythroid-specific, human globin gene expression.
Oligo[d(C) · (G)] runs exhibit a helical repeat of 11.1 bp in solution and cause slight DNA curvature when properly phased.
Sensitivity of HincW to CpG methylation.
Improved sequencing of cosmids using new primers and linearized DNA.
Nucleotide sequence of the intron of the germline human x immunoglobulin gene connecting the J and C regions reveals a matrix association region (MAR) next to the enhancer.
Upstream regions of the c-jun promoter regulate phorbol ester-induced transcription in U937 leukemic cells.
Dinucleotide repeat polymorphism located at D4S169.
Taql RFLP at D21S137.
Identification of polymorphisms by genomic denaturing gradient gel electrophoresis: Application to the proximal region of human chromosome 21.
Immunoglobulin variable heavy chain cDNA sequence from a patient with X-linked agammaglobulinemia.
Dinucleotide repeat polymorphism located at D21S120.
Sequence of the TCR β chain gene used by a t cell clone specific for the synthetic polymer, GAT.
Nucleotide sequence of Clostridium difficile toxin B gene.
Thermodynamics of the interactions of m-AMSA and o-AMSA with nucleic acids: Influence of ionic strength and DNA base composition.
Structural organization of the rat acyl-peptide hydrolase gene..
Isolation and mapping of a polymorphic DNA sequence pH30 on chromosome 4 [HGM provisional no. IMS 139].
Nucleotide and deduced amino acid sequences of nifE from Clostridium pasteurianum.
Cooperative binding of m-AMSA to nucleic acids.
1H NMR study of the solution structure of the self-complementary dodecanucleotide d(TGCA)3.
The presence of five nifH-like sequences in Clostridium pasteurianum: Sequence divergence and transcription properties.
Cosmid mapping of the human chorionic gonadotropin β subunit genes by field-inversion gel elect rophoresis.
Nucleotide and deduced amino acid sequences of nifD encoding the α-subunit of nitrogenase mofe protein of Clostridium pasteurianum.
Purification of the gam gene-product of bacteriophage mu and determination of the nucleotide sequence of the gam gene.
Nucleotide sequence of the human γ cytoskeletal actin mRNA: Anomalous evolution of vertebrate non-muscle actin genes.
Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli.
Modification of the melting properties of duplex DNA by attachment of a GC-rich DNA sequence as determined by denaturing gradient gel electrophoresis.
Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis.
The spc rtbosomal protein operon of Eschenchia coli: Sequence and cotranscriptlon of the rlbosomal protein genes and a protein export gene.
Characterization of a cloned histone gene cluster of the newt notophthalmus viridescens.