jrnl6026

Publication Venue For

  • CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries.  47:e84. 2019
  • BEERE: a web server for biomedical entity expansion, ranking and explorations.  47:W578-W586. 2019
  • Erratum: Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein (Nucleic acids research (2018) 46 20 (11030-11047)).  47:1599. 2019
  • A dual-functional priming-capping loop of rhabdoviral RNA polymerases directs terminal de novo initiation and capping intermediate formation.  47:299-309. 2019
  • Splice-Break: Exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders.  47. 2019
  • Non-canonical translation initiation of the spliced mRNA encoding the human T-cell leukemia virus type 1 basic leucine zipper protein.  46:11030-11047. 2018
  • PAGER 2.0: An update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.  46:D668-D676. 2018
  • Virus taxonomy: The database of the International Committee on Taxonomy of Viruses (ICTV).  46:D708-D717. 2018
  • Activities of gyrase and topoisomerase IV on positively supercoiled DNA.  45:9611-9624. 2017
  • Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate.  45:2829-2837. 2017
  • Molecular mechanisms by which oxidative DNA damage promotes telomerase activity.  45:11752-11765. 2017
  • Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV) 2017
  • Entropic stabilization of folded RNA in crowded solutions measured by SAXS.  44:9452-9461. 2016
  • CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.  44:W272-W276. 2016
  • Do nucleic acids moonlight as molecular chaperones?.  44:4835-4845. 2016
  • Signature motifs of GDP polyribonucleotidyltransferase, a non-segmented negative strand RNA viral mRNA capping enzyme, domain in the L protein are required for covalent enzyme-pRNA intermediate formation.  44:330-341. 2016
  • LKB1 preserves genome integrity by stimulating BRCA1 expression.  43:259-271. 2015
  • Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme.  43:1170-1176. 2015
  • Blocking of targeted microRNAs from next-generation sequencing libraries.  43. 2015
  • Massively parallel determination and modeling of endonuclease substrate specificity.  42:13839-13852. 2014
  • Retinoid acid-related orphan receptor γ, RORγ, participates in diurnal transcriptional regulation of lipid metabolic genes.  42:10448-10459. 2014
  • Characterization of the imprinting signature of mouse embryo fibroblasts by RNA deep sequencing.  42:1772-1783. 2014
  • Reprogramming homing endonuclease specificity through computational design and directed evolution.  42:2564-2576. 2014
  • Progressive engineering of a homing endonuclease genome editing reagent for the murine X-linked immunodeficiency locus.  42:6463-6475. 2014
  • Prospero-related homeobox 1 (Prox1) functions as a novel modulator of retinoic acid-related orphan receptors α- and γ-mediated transactivation.  41:6992-7008. 2013
  • Nucleocapsid protein structures from orthobunyaviruses reveal insight into ribonucleoprotein architecture and RNA polymerization.  41:5912-5926. 2013
  • Topoisomerase IV-quinolone interactions are mediated through a water-metal ion bridge: Mechanistic basis of quinolone resistance.  41:4628-4639. 2013
  • Physico-chemical foundations underpinning microarray and next-generation sequencing experiments.  41:2779-2796. 2013
  • MicroRNAs contribute to the maintenance of cell-type-specific physiological characteristics: MiR-192 targets Na+/K+-ATPase β1.  41:1273-1283. 2013
  • Redox-active quinones induces genome-wide DNA methylation changes by an iron-mediated and Tet-dependent mechanism.  gkt1090-gkt1090. 2013
  • TIGRFAMs and genome properties in 2013.  41. 2013
  • Phosphorylation of PNKP by ATM prevents its proteasomal degradation and enhances resistance to oxidative stress.  40:11404-11415. 2012
  • Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution.  40:10832-10850. 2012
  • RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo.  40:8519-8535. 2012
  • Hyperexpansion of GAA repeats affects post-initiation steps of FXN transcription in Friedreich's ataxia.  39:8366-8377. 2011
  • In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites.  39:7276-7288. 2011
  • Retinoic acid-related orphan receptor γ directly regulates neuronal PAS domain protein 2 transcription in vivo.  39:4769-4782. 2011
  • Mutant CAG repeats of Huntingtin transcript fold into hairpins, form nuclear foci and are targets for RNA interference.  39:3852-3863. 2011
  • Coordinated allele-specific histone acetylation at the differentially methylated regions of imprinted genes.  38:7974-7990. 2010
  • MicroRNA-target pairs in human renal epithelial cells treated with transforming growth factor β1: A novel role of miR-382.  38:8338-8347. 2010
  • Beyond Affymetrix arrays: Expanding the set of known hybridization isotherms and observing pre-wash signal intensities.  38. 2009
  • Long intronic GAA•TTC repeats induce epigenetic changes and reporter gene silencing in a molecular model of Friedreich ataxia.  36:6056-6065. 2008
  • Functional analysis of the zinc finger and activation domains of Glis3 and mutant Glis3(NDH1).  36:1690-1702. 2008
  • Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays.  35. 2007
  • Ubiquitin-interaction motifs of RAP80 are critical in its regulation of estrogen receptor α.  35:1673-1686. 2007
  • Electrospray ionisation-cleavable tandem nucleic acid mass tag-peptide nucleic acid conjugates: Synthesis and applications to quantitative genomic analysis using electrospray ionisation-MS/MS.  35. 2007
  • Selection and cloning of poly(rC)-binding protein 2 and Raf kinase inhibitor protein RNA activators of 2′,5′-oligoadenylate synthetase from prostate cancer cells.  34:6684-6695. 2006
  • Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted.  34. 2006
  • AliWABA: Alignment on the web through an A-Bruijn approach.  34. 2006
  • Krüppel-like zinc finger protein Gli-similar 2 (Glis2) represses transcription through interaction with C-terminal binding protein 1 (CtBP1).  33:6805-6815. 2005
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.  33. 2005
  • The ELAV RNA-stability factor HuR binds the 5′-untranslated region of the human IGF-IR transcript and differentially represses cap-dependent and IRES-mediated translation.  33:2962-2979. 2005
  • Expression and regulation of the Msx1 natural antisense transcript during development.  33:5208-5218. 2005
  • Advances in mechanisms of genetic instability related to hereditary neurological diseases.  33:3785-3798. 2005
  • Facile FMR1 mRNA structure regulation by interruptions in CGG repeats.  33:451-463. 2005
  • Poxvirus Bioinformatics Resource Center: A comprehensive Poxviridae informational and analytical resource.  33. 2005
  • TIP27: A novel repressor of the nuclear orphan receptor TAK1/TR4.  32:4194-4204. 2004
  • A Fugu-human genome synteny viewer: Web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes.  32:2618-2622. 2004
  • Rapid tagging of endogenous mouse genes by recombineering and ES cell complementation of tetraploid blastocysts..  32. 2004
  • GLIS3, a novel member of the GLIS subfamily of Krüppel-like zinc finger proteins with repressor and activation functions.  31:5513-5525. 2003
  • Structures of trinucleotide repeats in human transcripts and their functional implications.  31:5463-5468. 2003
  • Stability of the Sp3-DNA complex is promoter-specific: Sp3 efficiently competes with Sp1 for binding to promoters containing multiple Sp-sites.  31:5368-5376. 2003
  • Mitochondria-mediated nuclear mutator phenotype in Saccharomyces cerevisiae.  31:3909-3917. 2003
  • Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence.  31:3510-3517. 2003
  • Self-association and conformational properties of RAG1: Implications for formation of the V(D)J recombinase.  31:2014-2023. 2003
  • Uracil-DNA glycosylase-deficient yeast exhibit a mitochondrial mutator phenotype.  29:4935-4940. 2001
  • Overexpression of human RAD51 and RAD52 reduces double-strand break-induced homologous recombination in mammalian cells.  29:4352-4360. 2001
  • Mi2, an auto-antigen for dermatomyositis, is an ATP-dependent nucleosome remodeling factor.  29:2517-2521. 2001
  • A reliable assessment of 8-oxo-2-deoxyguanosine levels in nuclear and mitochondrial DNA using the sodium iodide method to isolate DNA.  29:2117-2126. 2001
  • Ku80 is required for addition of N nucleotides to V(D)J recombination junctions by terminal deoxynucleotidyl transferase.  29:1638-1646. 2001
  • Inactivation of Saccharomyces cerevisiae OGG1 DNA repair gene leads to an increased frequency of mitochondrial mutants.  29:1381-1388. 2001
  • Polymorphism in the 3′-untranslated region of TNFα mRNA impairs binding of the post-transcriptional regulatory protein HuR to TNFα mRNA.  29:863-871. 2001
  • Quantification of splice variants using real-time PCR..  29. 2001
  • Human β-globin gene promoter element regulates human β-globin gene developmental specificity.  28:2736-2740. 2000
  • A method for quantification of absolute amounts of nucleic acids by (RT)-PCR and a new mathematical model for data analysis..  28. 2000
  • RNA-binding analyses of HuC and HuD with the VEGF and c-myc 3'-untranslated regions using a novel ELISA-based assay..  28. 2000
  • Binding of the glucose-dependent Mig1p repressor to the GAL1 and GAL4 promoters in vivo: Regulation by glucose and chromatin structure.  27:1350-1358. 1999
  • Stochastic, stage-specific mechanisms account for the variegation of a human globin transgene.  26:2849-2858. 1998
  • Characterization of the RNA binding proteins forming complexes with a novel putative regulatory region in the 3'-UTR of TNF-α mRNA.  26:2803-2812. 1998
  • Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein.  25:814-821. 1997
  • PCR - SSCP - HDX analysis of pooled DNA for more rapid detection of germline mutations in large genes. The BRCA1 example.  24:1177-1178. 1996
  • A sindbis virus mRNA polynucleotide vector achieves prolonged and high level heterologous gene expression in vivo.  23:1495-1501. 1995
  • Photoaffinity approaches to determining the sequence selectivities of DNA-small molecule interactions: Actinomycin D and ethidium.  23:1252-1259. 1995
  • Rapid confirmation of single copy lambda prophage integration by PCR.  23:1278. 1995
  • Construction of a genomic DNA 'feature map' by sequencing from nested deletions: Application to the HLA class I region.  23:117-122. 1995
  • Mouse silver. Mutation is caused by a single base insertion in the putative cytoplasmic domain of Pmel 17.  23:154-158. 1995
  • Daunomycin modifies the sequence-selective recognition of DNA by actinomycin.  22:5241-5246. 1994
  • Rapid confirmation of single copy lambda prophage integration by PCR.  22:5765-5766. 1994
  • Mutagenesis of the cyclic AMP receptor protein of Escherichia coli: Targeting positions 83, 127 and 128 the cyclic nucleotide binding pocket.  22:2894-2901. 1994
  • Cloning and functional characterization of LCR-F1: A bZIP transcription factor that activates erythroid-specific, human globin gene expression.  22:2383-2391. 1994
  • Oligo[d(C) · (G)] runs exhibit a helical repeat of 11.1 bp in solution and cause slight DNA curvature when properly phased.  22:1562-1566. 1994
  • Sensitivity of HincW to CpG methylation.  21:2021. 1993
  • Improved sequencing of cosmids using new primers and linearized DNA.  20:6421-6422. 1992
  • Nucleotide sequence of the intron of the germline human x immunoglobulin gene connecting the J and C regions reveals a matrix association region (MAR) next to the enhancer.  20:4929-4930. 1992
  • Upstream regions of the c-jun promoter regulate phorbol ester-induced transcription in U937 leukemic cells.  20:897-902. 1992
  • Dinucleotide repeat polymorphism located at D4S169.  19:6347. 1991
  • Taql RFLP at D21S137.  19:4020. 1991
  • Identification of polymorphisms by genomic denaturing gradient gel electrophoresis: Application to the proximal region of human chromosome 21.  19:1475-1481. 1991
  • Immunoglobulin variable heavy chain cDNA sequence from a patient with X-linked agammaglobulinemia.  19:673. 1991
  • Dinucleotide repeat polymorphism located at D21S120.  18:6754. 1990
  • Sequence of the TCR β chain gene used by a t cell clone specific for the synthetic polymer, GAT.  18:5881. 1990
  • Nucleotide sequence of Clostridium difficile toxin B gene.  18:4004. 1990
  • Thermodynamics of the interactions of m-AMSA and o-AMSA with nucleic acids: Influence of ionic strength and DNA base composition.  17:9933-9946. 1989
  • Structural organization of the rat acyl-peptide hydrolase gene..  17:4397-4400. 1989
  • Isolation and mapping of a polymorphic DNA sequence pH30 on chromosome 4 [HGM provisional no. IMS 139].  17:4002. 1989
  • Nucleotide and deduced amino acid sequences of nifE from Clostridium pasteurianum.  17:3299. 1989
  • Cooperative binding of m-AMSA to nucleic acids.  16:9707-9719. 1988
  • 1H NMR study of the solution structure of the self-complementary dodecanucleotide d(TGCA)3.  16:7133-7143. 1988
  • The presence of five nifH-like sequences in Clostridium pasteurianum: Sequence divergence and transcription properties.  16:439-454. 1988
  • Cosmid mapping of the human chorionic gonadotropin β subunit genes by field-inversion gel elect rophoresis.  15:4437-4448. 1987
  • Nucleotide and deduced amino acid sequences of nifD encoding the α-subunit of nitrogenase mofe protein of Clostridium pasteurianum.  15:3935. 1987
  • Purification of the gam gene-product of bacteriophage mu and determination of the nucleotide sequence of the gam gene.  14:6901-6914. 1986
  • Nucleotide sequence of the human γ cytoskeletal actin mRNA: Anomalous evolution of vertebrate non-muscle actin genes.  14:5275-5294. 1986
  • Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli.  13:3891-3902. 1985
  • Modification of the melting properties of duplex DNA by attachment of a GC-rich DNA sequence as determined by denaturing gradient gel electrophoresis.  13:3111-3129. 1985
  • Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis.  13:3131-3145. 1985
  • The spc rtbosomal protein operon of Eschenchia coli: Sequence and cotranscriptlon of the rlbosomal protein genes and a protein export gene.  11:2599-2616. 1983
  • Characterization of a cloned histone gene cluster of the newt notophthalmus viridescens.  9:2281-2295. 1981