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HPAanalyze: An R package that facilitates the retrieval and analysis of the Human Protein Atlas data
Gsslasso Cox: A Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information
Repositioning drugs by targeting network modules: A Parkinson's disease case study
Evaluation of logistic regression models and effect of covariates for case-control study in RNA-Seq analysis
Negative binomial mixed models for analyzing microbiome count data
Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies
DMAP: A connectivity map database to enable identification of novel drug repositioning candidates
SLDR: A computational technique to identify novel genetic regulatory relationships
Towards accurate characterization of clonal heterogeneity based on structural variation
PAGED: A pathway and gene-set enrichment database to enable molecular phenotype discoveries
Reordering based integrative expression profiling for microarray classification.
. 13 Suppl 2.
ProPhylo: Partial phylogenetic profiling to guide protein family construction and assignment of biological process
HOMER: A human organ-specific molecular electronic repository
Meta-analysis of gene expression changes in response to radiation exposure
PEPPI: A peptidomic database of human protein isoforms for proteomics experiments
PEPPI: a peptidomic database of human protein isoforms for proteomics experiments.
. 11 Suppl 6:S7.
Association of genomewide newborn DNA methylation patterns with maternal and newborn characteristics
Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections
HPD: an online integrated human pathway database enabling systems biology studies.
. 10 Suppl 11:S5.
ProteoLens: A visual analytic tool for multi-scale database-driven biological network data mining
Representing and comparing protein structures as paths in three-dimensional space
Empirical validation of the S-Score algorithm in the analysis of gene expression data
A proposed metric for assessing the measurement quality of individual microarrays
Sources of variation in Affymetrix microarray experiments
Genomic multiple sequence alignments: Refinement using a genetic algorithm
HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data
SS-Wrapper: A package of wrapper applications for similarity searches on Linux clusters
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