BMC Bioinformatics

Journal

Publication Venue For

  • HPAanalyze: An R package that facilitates the retrieval and analysis of the Human Protein Atlas data.  20. 2019
  • Gsslasso Cox: A Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information.  20. 2019
  • Repositioning drugs by targeting network modules: A Parkinson's disease case study.  18. 2017
  • Evaluation of logistic regression models and effect of covariates for case-control study in RNA-Seq analysis.  18. 2017
  • Negative binomial mixed models for analyzing microbiome count data.  18. 2017
  • Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies.  16. 2015
  • DMAP: A connectivity map database to enable identification of novel drug repositioning candidates.  16. 2015
  • SLDR: A computational technique to identify novel genetic regulatory relationships.  15. 2014
  • Towards accurate characterization of clonal heterogeneity based on structural variation.  15:299-299. 2014
  • PAGED: A pathway and gene-set enrichment database to enable molecular phenotype discoveries.  13. 2012
  • Reordering based integrative expression profiling for microarray classification..  13 Suppl 2. 2012
  • ProPhylo: Partial phylogenetic profiling to guide protein family construction and assignment of biological process.  12. 2011
  • HOMER: A human organ-specific molecular electronic repository.  12. 2011
  • Meta-analysis of gene expression changes in response to radiation exposure.  12:A20-A20. 2011
  • PEPPI: A peptidomic database of human protein isoforms for proteomics experiments.  11. 2010
  • PEPPI: a peptidomic database of human protein isoforms for proteomics experiments..  11 Suppl 6:S7. 2010
  • Association of genomewide newborn DNA methylation patterns with maternal and newborn characteristics.  11. 2010
  • Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections.  11. 2010
  • HPD: an online integrated human pathway database enabling systems biology studies..  10 Suppl 11:S5. 2009
  • ProteoLens: A visual analytic tool for multi-scale database-driven biological network data mining.  9. 2008
  • Representing and comparing protein structures as paths in three-dimensional space.  7. 2006
  • Empirical validation of the S-Score algorithm in the analysis of gene expression data.  7. 2006
  • A proposed metric for assessing the measurement quality of individual microarrays.  7. 2006
  • Sources of variation in Affymetrix microarray experiments.  6. 2005
  • Genomic multiple sequence alignments: Refinement using a genetic algorithm.  6. 2005
  • HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data.  6. 2005
  • SS-Wrapper: A package of wrapper applications for similarity searches on Linux clusters.  5. 2004
  • International Standard Serial Number (issn)

  • 1471-2105
  • Electronic International Standard Serial Number (eissn)

  • 1471-2105