Positions

Selected Publications

Academic Article

Year Title Altmetric
2018 Methylation of High-Risk Human Papillomavirus Genomes are Associated with Cervical Precancer in HIV-positive Women.Cancer Epidemiology, Biomarkers and Prevention2018
2018 Variants in Immune-related Genes and Genital HPV 16 Persistence in Men.Papillomavirus Research2018
2018 Immunogenetic factors in early immune control of human immunodeficiency virus type 1 (HIV-1) infection: Evaluation of HLA class I amino acid variants in two African populations.Human Immunology.  79:166-171. 2018
2017 One Size Does Not Fit All: Genetic Prediction of Kawasaki Disease Treatment Response in Diverse Populations.Circulation: Cardiovascular Genetics.  10. 2017
2017 Spatial analysis of the regional variation of reproductive tract infections and spousal migration correlates in Nepal.Geospatial Health.  12:513. 2017
2017 Local Ancestry and Clinical Cardiovascular Events Among African Americans From the Atherosclerosis Risk in Communities Study.Journal of the American Heart Association : Cardiovascular and Cerebrovascular Disease.  6. 2017
2017 Admixture Mapping of Subclinical Atherosclerosis and Subsequent Clinical Events Among African Americans in 2 Large Cohort Studies.Circulation: Cardiovascular Genetics.  10. 2017
2017 Cervical cancer screening intervals and management for women living with HIVAIDS.  31:1035-1044. 2017
2017 Genetic basis for variation in plasma IL-18 levels in persons with chronic hepatitis C virus and human immunodeficiency virus-1 infections.Genes and Immunity.  18:82-87. 2017
2017 High-risk human papillomavirus infection and abnormal cervical cytology among Nepali and Bhutanese refugee women living in eastern Nepal.BMC Infectious Diseases.  17:73. 2017
2017 Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).PLoS ONE.  12:e0188725. 2017
2016 Increased Proportion of Variance Explained and Prediction Accuracy of Survival of Breast Cancer Patients with Use of Whole-Genome Multiomic Profiles.Genetics.  203:1425-1438. 2016
2016 Spousal migration and human papillomavirus infection among women in rural western Nepal.International Health.  8:261-268. 2016
2015 Challenges and Opportunities of Public Health Research in NepalKathmandu University medical journal (KUMJ).  12:1-1. 2015
2015 Imputation of class I and II HLA loci using high-density SNPs from ImmunoChip and their associations with Kawasaki disease in family-based study.European Journal of Immunogenetics.  42:140-146. 2015
2015 Mitochondrial DNA diversity in the African American population.DNA Sequence.  26:445-451. 2015
2015 Immunogenetic influences on acquisition of HIV-1 infection: consensus findings from two African cohorts point to an enhancer element in IL19 (1q32.2).Genes and Immunity.  16:213-220. 2015
2015 Improving parental stress levels among mothers living with HIV: a randomized control group intervention study.AIDS patient care.  29:220-228. 2015
2015 Preference for Human Papillomavirus–Based Cervical Cancer ScreeningJournal of Lower Genital Tract Disease.  19:119-123. 2015
2015 Deep sequencing of RYR3 gene identifies rare and common variants associated with increased carotid intima-media thickness (cIMT) in HIV-infected individuals.Journal of Human Genetics.  60:63-67. 2015
2014 Functional variants in CYP1A1 and GSTM1 are associated with clearance of cervical HPV infectionGynecologic Oncology.  135:560-564. 2014
2014 Functional variants in CYP1A1 and GSTM1 are associated with clearance of cervical HPV infection.Gynecologic Oncology.  135:560-564. 2014
2014 High-density genotyping of immune loci in Kawasaki disease and IVIG treatment response in European-American case-parent trio study.Genes and Immunity.  15:534-542. 2014
2014 SNP screening of central MHC-identified HLA-DMB as a candidate susceptibility gene for HIV-related Kaposi's sarcoma.Genes and Immunity.  15:424-429. 2014
2014 Mitochondrial DNA variation and virologic and immunological HIV outcomes in African Americans.AIDS.  28:1871-1878. 2014
2014 Identification of sequence variants in the CCL3 chemokine gene family in the HapMap West African reference population.Human Immunology.  75:854-858. 2014
2014 RYR3 gene variants in subclinical atherosclerosis among HIV-infected women in the Women's Interagency HIV Study (WIHS).Atherosclerosis.  233:666-672. 2014
2014 HIV, inflammation, and calcium in atherosclerosis.Arteriosclerosis, Thrombosis, and Vascular Biology.  34:244-250. 2014
2014 A candidate gene approach for virally induced cancer with application to HIV-related Kaposi's sarcoma.International Journal of Cancer.  134:397-404. 2014
2014 A qualitative study on factors impacting HIV care adherence among postpartum HIV-infected women in the rural southeastern USA.AIDS Care.  26:574-581. 2014
2014 Assessment of high-risk human papillomavirus infections using clinician- and self-collected cervical sampling methods in rural women from far western Nepal.PLoS ONE.  9:e101255. 2014
2014 Dense genotyping of immune-related loci identifies variants associated with clearance of HPV among HIV-positive women in the HIV epidemiology research study (HERS).PLoS ONE.  9:e99109. 2014
2014 Differential Gene Expression Landscape of Co-Existing Cervical Pre-Cancer Lesions Using RNA-seq.Frontiers in Oncology.  4:339. 2014
2014 Estimating proportions of explained variance: a comparison of whole genome subsets.BMC Proceedings.  8:S102. 2014
2014 Knowledge and awareness of human papillomavirus (HPV), cervical cancer and HPV vaccine among women in two distinct Nepali communities.Asian Pacific Journal of Cancer Prevention.  15:8287-8293. 2014
2013 Variants in interleukin family of cytokines genes influence clearance of high risk HPV in HIV-1 coinfected African-American adolescents.Human Immunology.  74:1696-1700. 2013
2013 Prevalence and correlates of cervico-vaginal clinical syndromes among women attending a health camp in Lalitpur district of Nepal.Kathmandu University medical journal (KUMJ).  11:268-273. 2013
2013 FcγR gene copy number in Kawasaki disease and intravenous immunoglobulin treatment response.Pharmacogenetics -London-.  23:455-462. 2013
2013 DC-SIGN gene promoter variants and IVIG treatment response in Kawasaki diseasePediatric Rheumatology.  11. 2013
2013 RYR3 gene polymorphisms and cardiovascular disease outcomes in the context of antihypertensive treatment.Pharmacogenomics Journal.  13:330-334. 2013
2013 Short communication: lack of occult HIV infection among non-AIDS-defining cancer patients in three academic oncology clinics in the United States.AIDS Research and Human Retroviruses.  29:887-891. 2013
2013 Key considerations and current perspectives of epidemiological studies on human papillomavirus persistence, the intermediate phenotype to cervical cancer.International Journal of Infectious Diseases.  17:e216-e220. 2013
2013 Genomic copy number variants: evidence for association with antibody response to anthrax vaccine adsorbed.PLoS ONE.  8:e64813. 2013
2012 Prevalence of proteinuria and elevated serum cystatin C among HIV-Infected Adolescents in the Reaching for Excellence in Adolescent Care and Health (REACH) study.Journal of Acquired Immune Deficiency Syndromes.  61:499-506. 2012
2012 Toll-like receptor gene variants associated with bacterial vaginosis among HIV-1 infected adolescents.Journal of Reproductive Immunology.  96:84-89. 2012
2012 Replication of RYR3 gene polymorphism association with cIMT among HIV-infected whites.AIDS.  26:1571-1573. 2012
2012 A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.Vaccine.  30:4778-4784. 2012
2012 Role of activating FcγR gene polymorphisms in Kawasaki disease susceptibility and intravenous immunoglobulin response.Circulation: Cardiovascular Genetics.  5:309-316. 2012
2012 Incidence, prevalence, and epidemiology of herpes simplex virus-2 in HIV-1-positive and HIV-1-negative adolescents.Sexually Transmitted Diseases.  39:300-305. 2012
2012 Genetic variations and heterosexual HIV-1 infection: analysis of clustered genes encoding CC-motif chemokine ligands.Genes and Immunity.  13:202-205. 2012
2012 The utility of mitochondrial and y chromosome phylogenetic data to improve correction for population stratification.Frontiers in Genetics.  3:301. 2012
2012 Transitional probability-based model for HPV clearance in HIV-1-positive adolescent females.PLoS ONE.  7:e30736. 2012
2011 Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.Pharmacogenetics -London-.  21:798-807. 2011
2011 Influence of host genetic and ecological factors in complex concomitant infections - relevance to sexually transmitted infections.Journal of Reproductive Immunology.  92:27-32. 2011
2011 Functional FCGR2B gene variants influence intravenous immunoglobulin response in patients with Kawasaki disease.Journal of Allergy and Clinical Immunology.  128:677-680. 2011
2011 Natural selection among Eurasians at genomic regions associated with HIV-1 control.BMC Evolutionary Biology.  11:173. 2011
2011 The influence of human leukocyte antigen class I alleles and their population frequencies on human immunodeficiency virus type 1 control among African Americans.Human Immunology.  72:312-318. 2011
2011 Association of chemokine receptor gene (CCR2-CCR5) haplotypes with acquisition and control of HIV-1 infection in Zambians.Retrovirology.  8:22. 2011
2011 Hormonal contraceptive use and response to antiretroviral therapy among adolescent femalesHIV and AIDS Review.  10:65-69. 2011
2010 Interleukin-10 (IL-10) pathway: genetic variants and outcomes of HIV-1 infection in African American adolescents.PLoS ONE.  5:e13384. 2010
2010 The impact of highly active antiretroviral therapy on prevalence and incidence of cervical human papillomavirus infections in HIV-positive adolescents.BMC Infectious Diseases.  10:295. 2010
2010 Variations in CCL3L gene cluster sequence and non-specific gene copy numbers.BMC Research Notes.  3:74. 2010
2010 Human leukocyte antigen class I supertypes and HIV-1 control in African Americans.Journal of Virology.  84:2610-2617. 2010
2010 A genome-wide association study of carotid atherosclerosis in HIV-infected men.AIDS.  24:583-592. 2010
2010 Association test of multiallelic gene copy numbers in family trios.Genetic Epidemiology.  34:2-6. 2010
2009 Clear and independent associations of several HLA-DRB1 alleles with differential antibody responses to hepatitis B vaccination in youth.Human Genetics.  126:685-696. 2009
2009 Gene copy number: learning to count past two.Nature Medicine.  15:1127-1129. 2009
2009 The major histocompatibility complex conserved extended haplotype 8.1 in AIDS-related non-Hodgkin lymphoma.Journal of Acquired Immune Deficiency Syndromes.  52:170-179. 2009
2009 Extended IL10 haplotypes and their association with HIV progression to AIDS.Genes and Immunity.  10:309-322. 2009
2009 Association of Y chromosome haplogroup I with HIV progression, and HAART outcome.Human Genetics.  125:281-294. 2009
2009 Host genetics and HIV-1 viral load set-point in African-Americans.AIDS.  23:673-677. 2009
2008 Evaluation of IL10, IL19 and IL20 gene polymorphisms and chronic hepatitis B infection outcome.European Journal of Immunogenetics.  35:255-264. 2008
2007 Interleukin-10 gene (IL10) polymorphisms and human papillomavirus clearance among immunosuppressed adolescents.Cancer Epidemiology, Biomarkers and Prevention.  16:1626-1632. 2007
2006 Multiperson use of syringes among injection drug users in a needle exchange program: a gene-based molecular epidemiologic analysis.Journal of Acquired Immune Deficiency Syndromes.  43:335-343. 2006
2006 Unknown biological mixtures evaluation using STR analytical quantification.ELECTROPHORESIS.  27:409-415. 2006
2006 Behavioral risk exposure and host genetics of susceptibility to HIV-1 infection.Journal of Infectious Diseases.  193:16-26. 2006
2005 Risk for HIV-1 infection associated with a common CXCL12 (SDF1) polymorphism and CXCR4 variation in an African population.Journal of Acquired Immune Deficiency Syndromes.  40:521-526. 2005
2005 Theory and methodology for utilizing genes as biomarkers to determine potential biological mixturesAnnals of Epidemiology.  15:29-38. 2005
2001 Markers for Mapping by Admixture Linkage Disequilibrium in African American and Hispanic PopulationsAmerican Journal of Human Genetics.  69:1080-1094. 2001
2000 Short tandem repeat methodology for genotypic identification of single-person versus multi-person use of syringesAIDS.  14:1507-1513. 2000
1996 3pK, a new mitogen-activated protein kinase-activated protein kinase located in the small cell lung cancer tumor suppressor gene region.Molecular and Cellular Biology.  16:868-876. 1996
Integration of Multi-Layer Omic Data for Prediction of Disease RiskProceedings, 10th World Congress of Genetics Applied to Livestock Production.  1-6.
Multilocus Linkage Analysis of the German Asthma DataGenetic Epidemiology.  21:S210-S215.
Role and uptake of human papillomavirus vaccine in adolescent health in the United StatesAdolescent Health, Medicine and Therapeutics.  63-63.

Chapter

Year Title Altmetric
2015 Mendelian Genetics 2015
2014 Mendelian Genetics 2014
2014 Research methods for genetic studies.  233-256. 2014
2008 Methods for Genetic Studies. In Essentials of Clinical Research 2008
2008 Susceptibility to Human Infectious Diseases, Genetics of. 2008

Teaching Activities

  • EPI695 - Epidemiology Seminar (Fall Term 2018) 2018
  • EPI698 - Directed Research (Fall Term 2018) 2018
  • EPI703 - Grant Writing (Fall Term 2018) 2018
  • EPI795 - Epidemiology Seminar (Fall Term 2018) 2018
  • EPI798 - Doctoral Directed Research (Fall Term 2018) 2018
  • EPI799 - Dissertation Research (Fall Term 2018) 2018
  • EPI799 - Dissertation Research (Summer Term 2018) 2018
  • EPI697 - Internship (Summer Term 2018) 2018
  • EPI798 - Doctoral Directed Research (Summer Term 2018) 2018
  • EPI695 - Epidemiology Seminar (Spring Term 2018) 2018
  • EPI699 - Project Research (Spring Term 2018) 2018
  • EPI798 - Doctoral Directed Research (Spring Term 2018) 2018
  • EPI799 - Dissertation Research (Spring Term 2018) 2018
  • EPI695 - Epidemiology Seminar (Fall Term 2017) 2017
  • EPI699 - Project Research (Fall Term 2017) 2017
  • EPI731 - Genetic Epidemiology (Fall Term 2017) 2017
  • EPI731L - Genetic EPI Lab (Fall Term 2017) 2017
  • EPI795 - Epidemiology Seminar (Fall Term 2017) 2017
  • EPI798 - Doctoral Directed Research (Fall Term 2017) 2017
  • EPI799 - Dissertation Research (Fall Term 2017) 2017
  • EPI799 - Dissertation Research (Summer Term 2017) 2017
  • EPI697 - Internship (Summer Term 2017) 2017
  • EPI798 - Doctoral Directed Research (Summer Term 2017) 2017
  • EPI695 - Epidemiology Seminar (Spring Term 2017) 2017
  • EPI699 - Project Research (Spring Term 2017) 2017
  • EPI795 - Epidemiology Seminar (Spring Term 2017) 2017
  • EPI798 - Doctoral Directed Research (Spring Term 2017) 2017
  • EPI799 - Dissertation Research (Spring Term 2017) 2017
  • EPI695 - Epidemiology Seminar (Fall Term 2016) 2016
  • EPI698 - Directed Research (Fall Term 2016) 2016
  • EPI795 - Epidemiology Seminar (Fall Term 2016) 2016
  • EPI798 - Doctoral Directed Research (Fall Term 2016) 2016
  • EPI799 - Dissertation Research (Fall Term 2016) 2016
  • EPI799 - Dissertation Research (Summer Term 2016) 2016
  • EPI697 - Internship (Summer Term 2016) 2016
  • EPI799 - Dissertation Research (Summer Term 2016) 2016
  • EPI695 - Epidemiology Seminar (Spring Term 2016) 2016
  • EPI798 - Doctoral Directed Research (Spring Term 2016) 2016
  • EPI799 - Dissertation Research (Spring Term 2016) 2016
  • EPI798 - Doctoral Directed Research (Fall Term 2015) 2015
  • EPI799 - Dissertation Research (Fall Term 2015) 2015
  • EPI635 - Genetics in Public Health (Summer Term 2015) 2015
  • EPI799 - Dissertation Research (Summer Term 2015) 2015
  • EPI799 - Dissertation Research (Summer Term 2015) 2015
  • EPI798 - Doctoral Directed Research (Spring Term 2015) 2015
  • EPI799 - Dissertation Research (Spring Term 2015) 2015
  • EPI799 - Dissertation Research (Fall Term 2014) 2014
  • EPI697 - Internship (Summer Term 2014) 2014
  • EPI799 - Dissertation Research (Summer Term 2014) 2014
  • EPI731 - Genetic Epidemiology (Spring Term 2014) 2014
  • EPI731L - Genetic EPI Lab (Spring Term 2014) 2014
  • EPI798 - Doctoral Directed Research (Spring Term 2014) 2014
  • EPI799 - Dissertation Research (Spring Term 2014) 2014
  • EPI697 - Internship (Fall Term 2013) 2013
  • EPI699 - Project Research (Fall Term 2013) 2013
  • EPI798 - Doctoral Directed Research (Fall Term 2013) 2013
  • EPI799 - Dissertation Research (Fall Term 2013) 2013
  • EPI798 - Doctoral Directed Research (Summer Term 2013) 2013
  • EPI698 - Directed Research (Spring Term 2013) 2013
  • EPI798 - Doctoral Directed Research (Spring Term 2013) 2013
  • EPI799 - Dissertation Research (Spring Term 2013) 2013
  • GBS721 - Genetic Epidemiology (Spring Term 2013) 2013
  • GBS721 - GENETIC EPIDEMIOLOGY (Spring Term 2013) 2013
  • EPI697 - Internship (Fall Term 2012) 2012
  • EPI698 - Directed Research (Fall Term 2012) 2012
  • EPI798 - Doctoral Directed Research (Fall Term 2012) 2012
  • EPI799 - Dissertation Research (Fall Term 2012) 2012
  • EPI697 - Internship (Summer Term 2012) 2012
  • EPI798 - Doctoral Directed Research (Summer Term 2012) 2012
  • EPI799 - Dissertation Research (Summer Term 2012) 2012
  • EPI635 - Genetics in Public Health (Spring Term 2012) 2012
  • EPI798 - Doctoral Directed Research (Spring Term 2012) 2012
  • EPI799 - Dissertation Research (Spring Term 2012) 2012
  • GBS721 - Genetic Epidemiology (Spring Term 2012) 2012
  • EPI798 - Doctoral Directed Research (Fall Term 2011) 2011
  • EPI799 - Dissertation Research (Fall Term 2011) 2011
  • EPI697 - Internship (Summer Term 2011) 2011
  • EPI798 - Doctoral Directed Research (Summer Term 2011) 2011
  • EPI799 - Dissertation Research (Summer Term 2011) 2011
  • EPI731 - Genetic Epidemiology (Spring Term 2011) 2011
  • EPI731L - Genetic EPI Lab (Spring Term 2011) 2011
  • EPI798 - Doctoral Directed Research (Spring Term 2011) 2011
  • GBS721 - Genetic Epidemiology (Spring Term 2011) 2011
  • EPI798 - Doctoral Directed Research (Fall Term 2010) 2010
  • EPI697 - Internship (Summer Term 2010) 2010
  • EPI793 - DrPH Practicum (Summer Term 2010) 2010
  • EPI798 - Doctoral Directed Research (Summer Term 2010) 2010
  • EPI635 - Genetics in Public Health (Spring Term 2010) 2010
  • EPI699 - Project Research (Spring Term 2010) 2010
  • EPI798 - Doctoral Directed Research (Spring Term 2010) 2010
  • EPI699 - Project Research (Fall Term 2009) 2009
  • EPI798 - Doctoral Directed Research (Fall Term 2009) 2009
  • EPI697 - Internship (Summer Term 2009) 2009
  • EPI699 - Project Research (Summer Term 2009) 2009
  • EPI798 - Doctoral Directed Research (Summer Term 2009) 2009
  • EPI699 - Project Research (Spring Term 2009) 2009
  • EPI731 - Genetic Epidemiology (Spring Term 2009) 2009
  • EPI699 - Project Research (Fall Term 2008) 2008
  • EPI697 - Internship (Summer Term 2008) 2008
  • EPI699 - Project Research (Spring Term 2008) 2008
  • EPI731 - Genetic Epidemiology (Spring Term 2008) 2008
  • Education And Training

  • Doctor of Philosophy in Biological and Biomedical Sciences, Johns Hopkins University
  • Master of Science in Epidemiology, Johns Hopkins University
  • Full Name

  • Sadeep Shrestha
  • Blazerid

  • sshresth