Selected Publications

Academic Article

Year Title Altmetric
2018 CUILESS2016: a clinical corpus applying compositional normalization of text mentions.Journal of Biomedical Semantics.  9:2. 2018
2016 Efficient identification of nationally mandated reportable cancer cases using natural language processing and machine learning.Journal of the American Medical Informatics Association.  23:1077-1084. 2016
2015 Comparative genome analysis of Mycoplasma pneumoniae.BMC Genomics.  16:610. 2015
2014 Draft Genome Sequence of Hymenobacter sp. Strain IS2118, Isolated from a Freshwater Lake in Schirmacher Oasis, Antarctica, Reveals Diverse Genes for Adaptation to Cold Ecosystems.Genome Announcements.  2. 2014
2014 Reduction of hydrogen peroxide accumulation and toxicity by a catalase from Mycoplasma iowae.PLoS ONE.  9:e105188. 2014
2013 Type 1 and type 2 strains of Mycoplasma pneumoniae form different biofilms.Microbiology.  159:737-747. 2013
2009 Annotating the human genome with Disease Ontology.BMC Genomics.  10 Suppl 1:S6. 2009
2007 Genomic differences of Vaccinia virus clones from Dryvax smallpox vaccine: the Dryvax-like ACAM2000 and the mouse neurovirulent Clone-3.Vaccine.  25:8807-8832. 2007
2007 OBO-Edit--an ontology editor for biologists.Computer applications in the biosciences : CABIOS.  23:2198-2200. 2007
2007 Other riffs on cooperation are already showing how well a wiki could work.Nature.  446:856. 2007
2007 Interpreting microarray results with gene ontology and MeSHMethods in Molecular Biology.  377:223-241. 2007
2007 GeneChip resequencing of the smallpox virus genome can identify novel strains: a biodefense application.Journal of Clinical Microbiology.  45:358-363. 2007
2007 Interpreting microarray results with gene ontology and MeSH.Methods in Molecular Biology.  377:223-242. 2007
2007 Mining biomedical data using MetaMap Transfer (MMtx) and the Unified Medical Language System (UMLS).Methods in Molecular Biology.  408:153-169. 2007
2006 Genomic sequence and analysis of a vaccinia virus isolate from a patient with a smallpox vaccine-related complication.Virology Journal.  3:88. 2006
2006 Genome sequence diversity and clues to the evolution of variola (smallpox) virus.Science.  313:807-812. 2006
2002 Poxvirus Orthologous Clusters (POCs).Computer applications in the biosciences : CABIOS.  18:1544-1545. 2002
1992 Assessing the five-factor model of personality description.Journal of Personality.  60:253-293. 1992

Education And Training

  • Doctor of Philosophy in Computer and Information Sciences, University of Alabama at Birmingham
  • Full Name

  • John Osborne