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DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features
. 38:i359-i368.
2022
PASSION: An ensemble neural network approach for identifying the binding sites of RBPs on circRNAs
. 36:4276-4282.
2020
DeepCleave: A deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites
. 36:1057-1065.
2020
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins
. 36:704-712.
2020
MRLR: Unraveling high-resolution meiotic recombination by linked reads
. 36:10-16.
2020
MULTiPly: A novel multi-layer predictor for discovering general and specific types of promoters
. 35:2957-2965.
2019
Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization.
. 35:2885.
2019
Bastion3: A two-layer ensemble predictor of type III secreted effectors
. 35:2017-2028.
2019
Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization
. 35:1395-1403.
2019
Quokka: A comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome
. 34:4223-4231.
2018
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates
. 34:3028-3029.
2018
Bastion6: A bioinformatics approach for accurate prediction of type VI secreted effectors
. 34:2546-2555.
2018
IFeature: A Python package and web server for features extraction and selection from protein and peptide sequences
. 34:2499-2502.
2018
anexVis: Visual analytics framework for analysis of RNA expression
. 34:2510-2512.
2018
R2DGC: Threshold-free peak alignment and identification for 2D gas chromatography-mass spectrometry in R
. 34:1789-1791.
2018
PROSPERous: High-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy
. 34:684-687.
2018
POSSUM: A bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles
. 33:2756-2758.
2017
Morphologically constrained spectral unmixing by dictionary learning for multiplex fluorescence microscopy.
. 33:2182-2190.
2017
ARNApipe: A balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments
. 33:1727-1729.
2017
PAGER: Constructing PAGs and new PAG-PAG relationships for network biology
. 31:i250-i257.
2015
A self-updating road map of the Cancer Genome Atlas
. 29:1333-1340.
2013
Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads
. 29:2427-2434.
2013
Rainbow: An integrated tool for efficient clustering and assembling RAD-seq reads
. 28:2732-2737.
2012
Genotype calling from next-generation sequencing data using haplotype information of reads
. 28:938-946.
2012
High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans
. 27:1384-1389.
2011
Length bias correction for RNA-seq data in gene set analyses
. 27:662-669.
2011
Inverse perturbation for optimal intervention in gene regulatory networks
. 27:103-110.
2011
Fluctuation anaLysis calculator: A web tool for the determination of mutation rate using Luria-Delbück fluctuation analysis
. 25:1564-1565.
2009
Haplotype inference for present-absent genotype data using previously identified haplotypes and haplotype patterns
. 23:2399-2406.
2007
HaploBuild: An algorithm to construct non-contiguous associated haplotypes in family based genetic studies
. 23:2190-2192.
2007
OBO-Edit - An ontology editor for biologists
. 23:2198-2200.
2007
R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses
. 23:641-643.
2007
Computational prediction of novel components of lung transcriptional networks
. 23:21-29.
2007
SScore: An R package for detecting differential gene expression without gene expression summaries
. 22:1272-1274.
2006
Noise and rank-dependent geometrical filter improves sensitivity of highly specific discovery by microarrays
. 21:4255-4262.
2005
A statistical model for HIV-1 sequence classification using the subtype analyser (STAR)
. 21:3535-3540.
2005
An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments
. 20:235-241.
2004
Poxvirus Orthologous Clusters (POCs)
. 18:1544-1545.
2002
Analysis of genomic sequences by Chaos Game Representation
. 17:429-437.
2001
Pathway analysis in metabolic databases via differential metabolic display (DMD)
. 16:825-836.
2000
Identity
International Standard Serial Number (issn)
1367-4803
Electronic International Standard Serial Number (eissn)
1367-4811
1460-2059