jrnl3172

Publication Venue For

  • MULTiPly: a novel multi-layer predictor for discovering general and specific types of promoters.  35:2957-2965. 2019
  • Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization..  35:2885. 2019
  • PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. 2019
  • MRLR: unraveling high-resolution meiotic recombination by linked reads. 2019
  • Bastion3: A two-layer ensemble predictor of type III secreted effectors.  35:2017-2028. 2019
  • Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization.  35:1395-1403. 2019
  • GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts.  34:4287-4289. 2018
  • SnapperDB: a database solution for routine sequencing analysis of bacterial isolates.  34:3028-3029. 2018
  • R2DGC: Threshold-free peak alignment and identification for 2D gas chromatography-mass spectrometry in R.  34:1789-1791. 2018
  • PROSPERous: High-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy.  34:684-687. 2018
  • AltHapAlignR: Improved accuracy of RNA-seq analyses through the use of alternative haplotypes.  34:2401-2408. 2018
  • Bastion6: A bioinformatics approach for accurate prediction of type VI secreted effectors.  34:2546-2555. 2018
  • IFeature: A Python package and web server for features extraction and selection from protein and peptide sequences.  34:2499-2502. 2018
  • Quokka: A comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.  34:4223-4231. 2018
  • anexVis: Visual analytics framework for analysis of RNA expression.  34:2510-2512. 2018
  • ARNApipe: A balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments.  33:1727-1729. 2017
  • POSSUM: A bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles.  33:2756-2758. 2017
  • PAGER: Constructing PAGs and new PAG-PAG relationships for network biology.  31:i250-i257. 2015
  • A self-updating road map of the Cancer Genome Atlas.  29:1333-1340. 2013
  • Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.  29:2427-2434. 2013
  • Genotype calling from next-generation sequencing data using haplotype information of reads.  28:938-946. 2012
  • High-dimensional pharmacogenetic prediction of a continuous trait using machine learning techniques with application to warfarin dose prediction in African Americans.  27:1384-1389. 2011
  • Length bias correction for RNA-seq data in gene set analyses.  27:662-669. 2011
  • Inverse perturbation for optimal intervention in gene regulatory networks.  27:103-110. 2011
  • Fluctuation anaLysis calculator: A web tool for the determination of mutation rate using Luria-Delb├╝ck fluctuation analysis.  25:1564-1565. 2009
  • Haplotype inference for present-absent genotype data using previously identified haplotypes and haplotype patterns.  23:2399-2406. 2007
  • HaploBuild: An algorithm to construct non-contiguous associated haplotypes in family based genetic studies.  23:2190-2192. 2007
  • OBO-Edit - An ontology editor for biologists.  23:2198-2200. 2007
  • R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses.  23:641-643. 2007
  • Computational prediction of novel components of lung transcriptional networks.  23:21-29. 2007
  • SScore: An R package for detecting differential gene expression without gene expression summaries.  22:1272-1274. 2006
  • A statistical model for HIV-1 sequence classification using the subtype analyser (STAR).  21:3535-3540. 2005
  • An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments.  20:235-241. 2004
  • Poxvirus Orthologous Clusters (POCs).  18:1544-1545. 2002
  • Analysis of genomic sequences by Chaos Game Representation.  17:429-437. 2001
  • Pathway analysis in metabolic databases via differential metabolic display (DMD).  16:825-836. 2000